DNA: strain P106E PI - SRA

SRX5824988: DNA: strain P106E PI
1 ILLUMINA (Illumina HiSeq 2500) run: 1.1M spots, 287.4M bases, 104.1Mb downloads

Design: DNA extracted and sent to Sanger centre for sequencing

Submitted by: Nottingham Trent University

Study: Isolation and characterization of lactose-positive Enterobacteriaceae from preterm neonates in Norwich, England

PRJNA471164 • SRP198255 • All experiments • All runs

Faeces of 109 preterm neonates was screened for lactose-positive Enterobacteriaceae using MacConkey agar. Isolates were tentatively identified using API 20E, then characterized fully using whole-genome sequence analyses. Carriage rates were determined for species. Pangenome analysis of K. oxytoca isolates was done, confirming separation of isolates into the three known phylogroups (Ko1, K. michiganensis; Ko2, K. oxytoca; Ko6, K. grimontii). Preprint associated with work https://www.biorxiv.org/content/10.1101/761924v1

Sample: Citrobacter freundii P106E PI

SAMN09204104 • SRS4753042 • All experiments • All runs

Organism: Citrobacter freundii

Library:

Name: P106E PI

Instrument: Illumina HiSeq 2500

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 1.1M spots, 287.4M bases, 104.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR9048464	1,149,416	287.4M	104.1Mb	2019-05-13

ID:: 7830706

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